# Young Seminars SIFS

La SIFS organizza gli **Young Seminars SIFS** su temi vari connessi alla Fisica Statistica, come attività culturale per dare uno spazio ai ricercatori più **giovani****, ovvero studenti, dottorandi e coloro che hanno ricevuto il titolo di dottorato da meno di 5 anni.**

I seminari hanno cadenza mensile, con due interventi nella stessa sessione, e saranno poi resi disponibili online tramite il canale Youtube ufficiale della SIFS, per chi fosse interessato e non riuscisse a seguirli in diretta.

I colloquia sono tenuti online sulla piattaforma **Microsoft Teams**.

## Istuzioni per partecipare ai Seminars

prima dell'orario stabilito per il seminario verrà pubblicato nella

**Home del sito web**della SIFS e**su questa pagina**, il**link per poter accedere**al meeting su Teams;chiunque può accedere al meeting semplicemente cliccando sul link, anche in assenza di un account Teams o Microsoft.

**Consigliamo fortemente l'uso di Google Chrome**che è completamente supportato da Teams, mentre altri browsers potrebbero dare problemi;una volta cliccato sul link è sufficiente seguire le indicazioni, inserendo un nome per essere individuabili nella riunione. Vi chiediamo di accedere alla riunione

**spegnendo videocamera e microfono**prima di entrare o**immediatamente**, in modo da alleggerire la piattaforma;i seminari verranno

**registrati**, per essere reso accessibile successivamente tramite il canale Youtube SIFS:**partecipando alla riunione date il consenso per la registrazione**;in ogni sessione si terranno due seminari di mezz'ora ciascuno, con 25 minuti riservati al

**talk**vero e 5 minuti riservati alle**domande.**

**Upcoming Seminars**

**Upcoming Seminars**Species coexistence and proteome allocation in competitive microbial communities

*Abstract:* Microbial communities are ubiquitous and play crucial roles in many natural processes. Despite their importance for the environment, industry and human health, however, there are still many aspects of microbial communities that we do not fully understand. It is a long-standing problem, for example, the fact that microbial communities are normally much more diverse than what models would allow. Recent experiments, then, have shown that the metabolism of microbial species in a community is intertwined with its structure, suggesting that properties at the intracellular level such as the allocation of cellular proteomic resources must be taken into account when describing microbial communities and species abundances. In this talk I will illustrate the problem of describing biodiversity in purely competitive microbial communities, and how models fail to predict the right number of coexisting species. Then, I will show how we can reconsider one of the most commonly used models to describe population dynamics in competitive ecosystems in light of known experimental results that link the species' growth rate to the allocation of their proteome. This new framework describes microbial communities at an "intermediate" level of complexity, describing the species' population dynamics while also retaining insights on the molecular aspects of growth. The results of the model are also compared to some experimental data.

*Date:* 13th May 2021 - 16.30 Rome Time

## The nonlinear response of Josephson devices: from the theoretical study to cutting edge applications

### Claudio Guarcello, University of Salerno

*Abstract:* Since its discovery nearly sixty years ago, the Josephson effect still represents an active frontier of condensed matter physics, continuously sparking interest in light of forefront applications and technological advancements. The Josephson effect is the quantum phenomenon describing the flow of a dissipationless current in weak links between two superconductors and it is at the base of phase-coherent superconducting circuits. Accessing the nonlinear dynamics of the Josephson phase, that is the macroscopic phase difference between the two superconductors forming the junction, permits to unveil the macroscopic response of the device and to promote new ideas in these fertile fields of research. In this talk, I will discuss the nonlinear behavior of Josephson phase in different contexts, giving an insight on recent results both from a theoretical side, e.g., noise induced phenomena, phase coherent caloritronics, and anomalous Josephson effects, and towards novel concrete applications, e.g., a phase battery, threshold detectors, and memory devices.

Strambini E., Iorio A., Durante O., Citro R., Sanz-Fernández C., Guarcello C., Tokatly I.V., Braggio A., Rocci M., Ligato N., Zannier V., Sorba L., Bergeret F.S., Giazotto F., A Josephson phase battery, Nature Nanotech., 15(8), 656, 2020

Guarcello C., Filatrella G., Spagnolo B., Pierro V., Valenti D., Voltage drop across Josephson junctions for Lévy noise detection, Phys. Rev. Research, 2, 043332, 2020

Paolucci F., Vischi F., De Simoni G., Guarcello C., Solinas P., Giazotto F., Field-Effect Controllable Metallic Josephson Interferometer, Nano Letters, 19(9), 6263, 2019

Guarcello C., Solinas P., Braggio A., Di Ventra M., Giazotto F., Josephson Thermal Memory, Phys. Rev. Appl., 9(1), 014021, 2018

*Date:* 13th May 2021 - 16.30 Rome Time

**Past Seminars**

**Past Seminars**## Orientation of active particles in turbulent flows

### Matteo Borgnino, Politecnico di Torino

*Abstract:* Active particles, such as motile microorganisms, typically experience complex environments which can have an impact on their dynamics. Even a simple laminar flow can give rise to intriguing phenomena when combined with self-propulsion or particular particles shapes; indeed, besides transporting particles, a surrounding flow can also affect particles dynamics producing non-trivial spatial patterns or changing the particles swimming direction. It is therefore crucial to better understand the complex interplay between flow advection, particles orientation and self-propulsion. In this talk we investigate the alignment of spheroidal, axisymmetric microswimmers, whose shapes ranges from disks to rods, swimming in turbulent flows. In particular, by means of numerical simulation, we show that rodlike active particles preferentially align with the flow velocity. To explain the underlying mechanism, we solve a statistical model via the perturbation theory, showing that such an alignment is the result of particles’ swimming and non-sphericity together with the correlations of fluid velocity and its gradients along particle paths. Remarkably, the discovered alignment is found to be a robust kinematical effect, independent of the underlying flow evolution.

*Date:* 8th April 2021 - 16.30 Rome Time

## Evidence of glassy phases in large interacting ecosystems with demographic noise

*Abstract:* Many complex systems in Nature, from metabolic networks to ecosystems, appear to be poised at the edge of stability, hence displaying enormous responses to external perturbations.

This feature, also known in physics as *marginal stability*, is often the consequence of the complex underlying interaction network, which can induce large-scale collective dynamics and therefore critical behaviors.

In this seminar, I will present the problem of ecological complexity by focusing on a reference model in theoretical ecology, the high-dimensional Lotka-Volterra model with random symmetric interactions and finite demographic noise [1]. I will show how to obtain a complete characterization of the phase diagrams by means of techniques rooted in mean-field spin-glass theory. Notably, I will relate emerging collective behaviors and slow relaxation dynamics to the appearance of different phases and rough energy landscapes akin to those occurring in glassy systems [2,3]. I will describe in particular: i) a multiple equilibria phase, which can be proven to be associated with an exponential number of stable equilibria in the system size; ii) a marginally stable amorphous phase (denoted as *Gardner phase*) as characterized by a hierarchical organization of these equilibria [1].

Finally, I will discuss the wide-ranging applicability of these outcomes to many different contexts, from evolutionary game theory to complex economic systems.

[1] A. Altieri, F. Roy, C. Cammarota, G. Biroli, *Properties of equilibria and glassy phases of the random Lotka-Volterra model with demographic noise*, arXiv:2009.10565 (2020).

[2] P. Charbonneau, J. Kurchan, G. Parisi, P. Urbani, *Fractal free energy landscapes in structural glasses*, Nature Communications 5, 3725 (2014).

[3] A. Altieri, *Jamming and Glass Transitions: In Mean-Field Theory and Beyond*, Springer Nature (2019).

*Date:* 8th April 2021 - 16.30 Rome Time

## Phase behavior and ordering kinetics of self-propelled particles in 2D

### Pasquale Digregorio, CECAM Centre Européen de Calcul Atomique et Moléculaire, Ecole Polytechnique Fédérale de Lausanne, Switzerland

*Abstract:* The so-called Active Brownian Particles (ABP) model has undoubtedly become one of the fundamental models in out-of-equilibrium statistical mechanics. Even though it appeared in literature less than ten years ago, it already represents one the reference models for active

matter and, particularly, for self-propelled objects. We recently studied the structural properties of the stationary phases and the ordering

phase transitions of these active systems, picturing the phase diagram for ABPs with steric repulsive interactions in two spatial dimensions. We found that ordering phase transitions at any magnitude of self-propulsion can be well understood within the framework of equilibrium KTHNY melting in 2D. We also explored some fundamental features of the so-called Motility-Induced Phase Separation, a well known phenomenon of clustering of self-propelled particles with no attractive interaction. We particularly studied the clustering kinetics, identifying different

growing stages, before a late coarsening regime which fulfills a dynamical scaling hypothesis. On top of the growth of a dense phase, we pointed out that the coarsening of solid-like domains with different hexatic orientation is arrested, and that their stationary finite size can be controlled by the intensity of the self-propulsion.

*Date:* 11th March 2021 - 16.30 Rome Time

## Statistical mechanics of interacting polymers explains chromosome folding

*Abstract:* Chromosomes are folded in complex, non-random three-dimensional conformations within the cell nucleus, as highlighted by novel biochemical and microscopy technologies. Notably, chromosomes architecture and their interaction network are involved in vital cell functions, controlling gene expression, whereas abnormal chromosome folding has been linked to diseases. In this talk, I discuss how massive data on genome architecture, generated thanks to significant experimental advances in the last decade, can be explained in a principled approach based on the statistical mechanics of polymers and some of their underlying molecular mechanisms understood. I also discuss how polymer models can be employed to investigate chromosome structure at the single-molecule level and to predict the effects of pathogenic genomic mutations, as validated by experimental data, opening the way to revolutionary medical applications.

*Date:* 11th March 2021 - 16.30 Rome Time

## Getting hotter by heating less: how driven granular materials dissipate energy in excess

*Abstract:* A fundamental question in systems driven out of thermodynamic equilibrium is how the properties of the Non Equilibrium Stationary States (NESS) are related to the specific mechanisms by which external energy is supplied. Vibro-fluidized granular matter, where a NESS is reached through a balance between the energy injected by a mechanical vibration and the dissipation due to inelastic collisions, represents a good context to tackle this problem.

In this talk, we present experimental and numerical results about the relation between the kinetic energy acquired by a driven dense granular system and the input energy. Our focus is on the dependence of the granular behavior on two main parameters: frequency and vibration amplitude. We find that there exists an optimal forcing frequency, at which the system reaches the maximal kinetic energy: if the input energy is increased beyond such a threshold, the system dissipates more and more energy and recovers a colder and more viscous state. Studying dissipative properties of the system, we unveil a striking difference between this nonmonotonic behavior and a standard resonance mechanism. This feature is also observed at the microscopic scale of the single-grain dynamics and can be interpreted as an instance of negative specific heat. An analytically solvable model based on a generalized forced-damped oscillator well reproduces the observed phenomenology, illustrating the role of the competing effects of forcing and dissipation.

*Date:* 11th February 2021 - 16.30 Rome Time

## Modelling Immune Recognition with Restricted Boltzmann Machines

*Abstract:* The immune response of an organism when it is infected by a pathogen is based on the recognition of small portions of its proteins. This raises two questions: what protein portions are relevant to this process? And what immune cells are able to recognize them? In this talk, I will discuss models to answer those two questions that are based on the machine learning method known as Restricted Boltzmann Machine and that are learned from large protein sequence datasets. These models provide flexible and interpretable frameworks to characterize and predict immune recognition of both cancer and infections.

*Date:* 11th February 2021 - 16.30 Rome Time

## Synthetic models for quantum many-body physics out of equilibrium

*Abstract:* It has been known for a long time that thermalization is associated with "chaotic'' behavior at the microscopic level, although a quantitative understanding of its key mechanisms from fundamental theories poses formidable challenges. This problem can be effectively tackled in isolated many-body quantum systems, where the absence of interactions with the environment allows us to gain valuable insight from both first-principle calculations, and quantum simulation experiments. In this talk, I will review recent studies aiming at capturing the most relevant aspects of thermalization processes using theoretical "quantum circuit" models for the many-body dynamics, which are inspired by ideas of quantum simulation by quantum computers. In particular, I will focus on how standard tools in statistical mechanics have been successfully employed for obtaining nontrivial analytic results in this context.

*Date:* 14th January 2021 - 16.30 Rome Time

## Spatial patterns in the velocity field of Active Matter systems

*Abstract:* Many systems of biological or technological interest, such as bacterial colonies or cell monolayers, show spatial patterns in their velocity field without displaying a global polarization. In this talk, we investigate this phenomenon through a non-equilibrium stochastic dynamics, the so-called Active Brownian Particles (ABP), which is one of the most popular minimal models to describe the behavior of several experimental active particles. We report the first evidence that pure repulsive spherical ABP, without alignment interactions, spontaneously form large domains of particles with aligned velocities, both in homogeneous dense phases and phase-separated regimes. The size of the velocity domains is measured through the correlation length of the spatial velocity correlations whose shape is analytically predicted. We unveil the non-thermal nature of this collective phenomenon that, instead, is induced by the interplay between steric interactions and active forces, also highlighting the dynamical role played by inertial forces. The results are summarized in a non-equilibrium phase diagram, packing fraction vs persistence time, where the structural properties of the system (distinguishing active liquid, hexatic and solid phases) are superimposed with the velocity correlation lengths. The presence of the almost-translational order typical of hexatic and solid configurations plays a crucial role and reveals an interesting scenario which also involves intermittency phenomena in the time-trajectory of the kinetic energy.

*Date:* 14th January 2021 - 16.30 Rome Time